METPO v7 (2 causal-mechanism classes) + ground 4 residual concepts + #535 ID ranges#114
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…ncepts New proposal cohort metpo_traitmech_v7 lifts the 2 genuinely-novel recurring causal-graph mechanism concepts from the node residual that have no METPO/GO/ CHEBI/ENVO/PATO home: METPO:1007720 salt-in strategy (5 edges; halophile K+/Cl- osmoadaptation) METPO:1007721 reductive genome evolution (3 edges; gene-loss genome reduction) Parented under METPO:1000059 (phenotype) as a fallback; maintainers may reslot (flagged). robot-validate PASS (ELK no UNSAT, +6). Grounding tail (matching, not proposing) — 2 residual concepts had existing ontology homes after all: hydrostatic pressure -> PATO:0001025 pressure (4 edges) chemotaxis signaling -> GO:0006935 chemotaxis (3 edges) Node grounding 1011 -> 1024 / 1643 (61% -> 62%). The rest of the residual is non-ontological graph-narrative phrases — deliberately left as free-text labels rather than force-matched or proposed. ID ranges reserved against the latest METPO release (2026-06-12, w3id/BioPortal): 1-series used to 1007093, 2-series to 2000734; v7 takes 1007720-1007721 (next free above v5). #535 updated with concrete suggested mintable ranges. validate-strict 0 errors; id-label gate clean; grounding idempotent; pages regen. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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Works the two remaining backlog issues, anchored to the latest METPO release (
2026-06-12, w3id PURL = what BioPortal serves; BioPortal's API needs a key).1. New terms for the non-ontological residual → cohort v7
The node residual is overwhelmingly graph-narrative phrases (adaptation states, composite descriptors) and vague verbs — not ontology concepts. Only 2 are genuinely-novel, recurring, no-home mechanism concepts, lifted as a tight v7 cohort:
METPO:1007720METPO:1007721Parented under
METPO:1000059(phenotype) as a fallback, flagged for maintainer reslotting.robot-validatePASS (ELK no UNSAT, +6).Two further residual concepts turned out to have existing homes and were grounded, not proposed:
hydrostatic pressure→PATO:0001025,chemotaxis signaling→GO:0006935. Node grounding 61% → 62% (1024/1643). The rest of the residual is deliberately left as free-text labels.2. #535 round-trip — BioPortal-release-based ID ranges
None of the v1–v7 placeholders are minted upstream yet (the
2007xxxband is wholly free;1007xxxused only to1007093), so the round-trip stays blocked on the maintainers. I commented on #535 with concrete suggested mintable ranges from the release frontier — classes1007094–1007238(145), predicates2000735–2000747(13) — and flagged that the 1-series frontier is only ~300 IDs below TraitMech's1007400placeholders (mint soon to avoid a future renumber). v7 added to the submission (total now 145 classes + 13 predicates).Verification
just verify-proposal/robot-validate-proposal metpo_traitmech_v7— pass.just validate-strict: 477 files, 0 errors. id↔label gate clean. Grounding idempotent. Pages regenerated.🤖 Generated with Claude Code